Question is in the title
The Integration Guide would be a good starting point:
https://letsencrypt.org/docs/integration-guide/
A lot of it depends on your environment, so a bit more background would be useful if you want more specific advice.
One very easy scenario is if you already offer cPanel, you can upgrade to a newer cPanel with AutoSSL and install their Letβs Encrypt add-on. Then whether or not customers can get single click SSL certificates is a cPanel setting.
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