Letsencrypt-auto not finding my sites

I’m running CENTOS 7.2 with the latest cpanel and I’m trying to install certificates for the sites running on that machine. When I run letsencrypt-auto it only finds the main domain that the server is running under. None of the virtual hosts are found. Is there something I’m doing wrong?

Thanks!

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I’m seeing the same thing here. Only one of the sites in my /sites-available/ or /sites-enabled/ directories are showing in the setup tool.

Letsencrypt-auto doesn’t work fully with most of the sites that have a “control panel” (such as cpanel) which modify the apache config themselves. This is for a number of reasons including that cpanel puts all the config into a single file rather than in separate config’s per domain.

@olivermarshall2, if you are not using cpanel ( you don’t specify ) then you might be seeing a different issue than the original poster.