Please fill out the fields below so we can help you better. Note: you must provide your domain name to get help. Domain names for issued certificates are all made public in Certificate Transparency logs (e.g. crt.sh | example.com), so withholding your domain name here does not increase secrecy, but only makes it harder for us to provide help.
First, an Apache server is listening on port 80 (and 443) so you can quit trying to use the --nginx plug-in
So, you got two certs just a couple hours ago although the only domain name in the cert is the root name. The missing www subdomain is not the biggest problem right now.
But, your server is using a cert with the allhotels.com domain (and its www subdomain). Your IP address for dailydeal.com is wrong or your Apache config is faulty. Do you recognize allhotels? Is your Apache version 2.4.18?
VirtualHost configuration:
*:443 is a NameVirtualHost
default server cheaptextbooks.com (/etc/apache2/sites-enabled/cheaptextbooks.com-le-ssl.conf:1)
port 443 namevhost cheaptextbooks.com (/etc/apache2/sites-enabled/cheaptextbooks.com-le-ssl.conf:1)
alias www.cheaptextbooks.com
port 443 namevhost dailydeal.com (/etc/apache2/sites-enabled/dailydeal.com-le-ssl.conf:1)
alias www.dailydeal.com
port 443 namevhost freeonmessagedomains.com (/etc/apache2/sites-enabled/freeonmessagedomains.com.conf:21)
alias www.freeonmessagedomains.com
port 443 namevhost namedream.com (/etc/apache2/sites-enabled/namedream.com-le-ssl.conf:1)
alias www.namedream.com
*:80 is a NameVirtualHost
default server cheaptextbooks.com (/etc/apache2/sites-enabled/cheaptextbooks.com.conf:1)
port 80 namevhost cheaptextbooks.com (/etc/apache2/sites-enabled/cheaptextbooks.com.conf:1)
alias www.cheaptextbooks.com
port 80 namevhost dailydeal.com (/etc/apache2/sites-enabled/dailydeal.com-le-ssl.conf:25)
alias www.dailydeal.com
port 80 namevhost dailydeal.com (/etc/apache2/sites-enabled/dailydeal.com.conf:1)
alias www.dailydeal.com
port 80 namevhost freeonmessagedomains.com (/etc/apache2/sites-enabled/freeonmessagedomains.com.conf:1)
alias www.freeonmessagedomains.com
port 80 namevhost namedream.com (/etc/apache2/sites-enabled/namedream.com.conf:1)
alias www.namedream.com
root@Droplet5:~# service apache2 restart
root@Droplet5:~#