Why is cert.pem not being auto generated?

@rg305: I got it working. Thank you for the advice. The solution was really straight forward. Like you said, I deleted my old theinitiate.agency-le-ssl.conf in both my sites-available and the symlink inside sites-enabled. I ran the cert-bot command and let’s encrypt automatically generated a new -le-ssl.conf. My site is accessible now. Thanks again, my friend.

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