lol. bang bang...
Anyone who uses letsEncrypt and Zpanel now called Sentora will have the same problem.
has an include for the zpanel generated
# ZPanel Apache Include file for CentOS Linux
# Written by Bobby Allen, 15/05/2011
# Set the Zpanel Alias (used for development, sable will eventually use a VHOST)
Alias /zpanel /etc/zpanel/panel
# Setup the directory settings and PHP security flags for the Zpanel application directory.
AddType application/x-httpd-php .php
php_flag magic_quotes_gpc Off
php_flag track_vars On
php_flag register_globals Off
php_admin_value upload_tmp_dir /etc/zpanel/temp
# Disallow web access to directories that don't need it/that we don't want people looking in!
Deny from All
# Set server tokens (security??)
# Now we include the generic VHOST configuration file that holds all the ZPanel user hosted vhost data
#CUSTOM SSL LetsEncrypt CONFIGURATION