Can you show the contents of /etc/ssl, please?
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It basically sounds like you deleted /etc/ssl/certs, which is not related to Certbot, but is a crucial part of your operating system.
You should be able to get it back into proper state with:
sudo apt install --reinstall ca-certificates
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I read that as:
I deleted everything named ssl
and
letsencrypt.
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Yes It worked, I installed than certbot and created certificate. When it was creating certificate I saw smth on red colour but cant really see what is it becouse it cleared screen so fast. I still have this error ERR_SSL_VERSION_OR_CIPHER_MISMATCH. I searched for command checking certificates but cant find anything on web.
And sorry for long responde becouse I was really tired and went sleep.
I tried to join domain on incognito tab and it worked! but dont have any ssl certificate.
Are you also using CloudFlare on this domain?
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Yes domain is connected with cloudflare
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