Certificate is not Trusted

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Perhaps the issue is that Certbot doesn’t know how to locate the Bitnami-managed Apache installation.

You would either need to point it using the provided flags:

apache:
  Apache Web Server plugin - Beta

  --apache-enmod APACHE_ENMOD
                        Path to the Apache 'a2enmod' binary. (default:
                        a2enmod)
  --apache-dismod APACHE_DISMOD
                        Path to the Apache 'a2dismod' binary. (default:
                        a2dismod)
  --apache-le-vhost-ext APACHE_LE_VHOST_EXT
                        SSL vhost configuration extension. (default: -le-
                        ssl.conf)
  --apache-server-root APACHE_SERVER_ROOT
                        Apache server root directory. (default: /etc/apache2)
  --apache-vhost-root APACHE_VHOST_ROOT
                        Apache server VirtualHost configuration root (default:
                        /etc/apache2/sites-available)
  --apache-logs-root APACHE_LOGS_ROOT
                        Apache server logs directory (default:
                        /var/log/apache2)
  --apache-challenge-location APACHE_CHALLENGE_LOCATION
                        Directory path for challenge configuration. (default:
                        /etc/apache2)
  --apache-handle-modules APACHE_HANDLE_MODULES
                        Let installer handle enabling required modules for
                        you.(Only Ubuntu/Debian currently) (default: True)
  --apache-handle-sites APACHE_HANDLE_SITES
                        Let installer handle enabling sites for you.(Only
                        Ubuntu/Debian currently) (default: True)

or just manually change the SSLCertificateFile and SSLCertificateKeyFile references to e.g. /etc/letsencrypt/live/example.com/cert.pem and privkey.pem .

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