Note also that, due to how the TLS-SNI-01 validation type is being phased out, the staging environment happens to be using HTTP-01 for your sites.
Beyond that semi-useful background, I dunno.
I notice that your site redirects HTTP to HTTPS (which is fine) but HTTPS requests seem to be a little slow. Maybe the server is overloaded? And answering multiple simultaneous requests from Let's Encrypt takes too long?