Certbot on Apache - Unable to Parse Multiple VHOSTS in one File

My domain is:

www.skimecca.org

I ran this command:

certbot-auto --apache

It produced this output:

This is the last try. rg305 suggested trying only one of the sites. I had the same result yesterday with all sites.

/root/.local/share/letsencrypt/lib/python2.6/site-packages/cryptography/__init__.py:26: DeprecationWarning: Python 2.6 is no longer supported by the Python core team, please upgrade your Python. A future version of cryptography will drop support for Python 2.6
  DeprecationWarning
Saving debug log to /var/log/letsencrypt/letsencrypt.log

Which names would you like to activate HTTPS for?
-------------------------------------------------------------------------------
1: borborygmosity.org
2: www.borborygmosity.org
3: ironwoodaikidoclub.org
4: www.ironwoodaikidoclub.org
5: skimecca.com
6: www.skimecca.org
-------------------------------------------------------------------------------
Select the appropriate numbers separated by commas and/or spaces, or leave input
blank to select all options shown (Enter 'c' to cancel):6
Obtaining a new certificate
Performing the following challenges:
tls-sni-01 challenge for www.skimecca.org
Waiting for verification...
Cleaning up challenges
Could not reverse map the HTTPS VirtualHost to the original

IMPORTANT NOTES:
 - Unable to install the certificate
 - Congratulations! Your certificate and chain have been saved at
   /etc/letsencrypt/live/www.skimecca.org/fullchain.pem. Your cert
   will expire on 2017-08-06. To obtain a new or tweaked version of
   this certificate in the future, simply run certbot-auto again with
   the "certonly" option. To non-interactively renew *all* of your
   certificates, run "certbot-auto renew"

My operating system is (include version):

CentOS release 6.9 (Final)

My web server is (include version):

Apache 2.2.15

My hosting provider, if applicable, is:

OpenVirtuals

I can login to a root shell on my machine (yes or no, or I don’t know):

Yes

I’m using a control panel to manage my site (no, or provide the name and version of the control panel):

No