Best Practice for multiple domains on single server

I expect I will have 100 -200 domain names

e.g drmarkbrown.com

but then I know that SSL get’s issued for both drmarkbrown.com and
www.drmarkbrown.com

as I mentioned, the domains have A record set to the IP of the server

in the past, I had been on managed server with MICFO managed hosting (they went belly up last week)

domains are registered on godaddy, I set A record to the IP of the upcloud server

previously, domains were on server as ‘add-oin’ domains—

do I need to have domains as add-on domains or just set as they are for SSL to work?

Thanks

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